35. | V. Gaydar, R. Zananiri, L. Saied, O. Dvir, A. Kaplan and A. Henn, “Communication between DNA and nucleotide binding sites facilitates stepping by the RecBCD helicase”, Nucleic Acids Research (2024). | |
34. | R. Zananiri*, S. Mangapuram Venkata*, V. Gaydar*, D. Yahalom, O. Malik, S. Rudnizky, O. Kleifeld, A. Kaplan and A. Henn, “Auxiliary ATP binding sites support DNA unwinding by RecBCD”, Nature Communications 13, 1806 (2022) | |
33. | H. Khamis, S. Rudnizky, P. Melamed and A. Kaplan, “Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation”, Nucleic Acids Research (2021) | |
32. | S. Rudnizky, H. Khamis, Y. Ginosar, E. Goren, P. Melamed and A. Kaplan, “Extended and dynamic linker histone-DNA interactions control chromatosome compaction”, Molecular Cell 81, 3410 (2021) | |
31. | B. Bar-Sadeh, S. Rudnizky, L. Pnueli, G. R. Bentley, R. Stöger, A. Kaplan and P. Melamed, “Unravelling the role of epigenetics in reproductive adaptations to early-life environment”, Nature Reviews Endocrinology (2020) | |
30. | S. Rudnizky*, H. Khamis*, O. Malik, P. Melamed, and A. Kaplan, “The base pair-scale diffusion of nucleosomes modulates binding of transcription factors”, PNAS 116, 12161 (2019). | |
29. | R. Kreiserman, O. Malik and A. Kaplan, “Decoupling conservative forces and hydrodynamic interactions between optically trapped spheres”, Phys. Rev. E 99, 012611 (2019). | |
28. | R. Zananiri, O. Malik, S. Rudnizky, V. Gaydar, R. Kreiserman, A. Henn and A. Kaplan, “Synergy between RecBCD subunits is essential for efficient DNA unwinding”, eLife 8, e40836 (2019). | |
27. | B. Zhitomirsky, A. Yunaev, R. Kreiserman, A. Kaplan, M. Stark, and Y. Assaraf, “Lysosomotropic drugs activate TFEB via lysosomal membrane fluidization and consequent inhibition of mTORC1 activity”, Cell Death Dis. 9, 1191 (2018). | |
26. | P. Melamed, M. Haj, Y. Yosefzon, S. Rudnizky, A. Wijeweera, L. Pnueli and A. Kaplan, “Multifaceted targeting of the chromatin mediates GnRH effects on gene expression in the gonadotrope”, Frontiers in Endocrinology 9, 58 (2018). | |
25. | H. Khamis, S. Rudnizky and A. Kaplan, “Mobile nucleosomes and the accessibility of transcription factors to DNA: a modified dynamic equilibrium model”, | |
24. | S. Rudnizky*, H. Khamis*, O. Malik, A. Squires, A. Meller, P. Melamed and A. Kaplan, “Single-molecule DNA unzipping reveals asymmetric modulation of a transcription factor by its binding site sequence and context”, Nucleic Acids Research 46, 1513 (2018). | |
23. | O. Malik*, H. Khamis*, S. Rudnizky and A. Kaplan, “The mechano-chemistry of a monomeric reverse transcriptase”, Nucleic Acids Research 45, 12954 (2017). | |
22. | O. Malik*, H. Khamis*, S. Rudnizky, A. Marx and A. Kaplan, “Pausing kinetics dominates strand-displacement polymerization by Reverse Transcriptase”, Nucleic Acids Research 45, 10190 (2017). | |
21. | S. Rudnizky, O. Malik, A. Bavly, L. Pnueli, P. Melamed and A. Kaplan, “Nucleosome mobility and the regulation of gene expression: Insights from single-molecule studies“, Protein Science 26, 1266 (2017). | |
20. | S. Rudnizky, A. Bavly, O. Malik, L. Pnueli, P. Melamed and A. Kaplan, “H2A.Z controls the stability and mobility of nucleosomes to regulate expression of the LH genes”, Nature Communications 7, 12958 (2016). | |
19. | T. Liu*, A. Kaplan*, L. Alexander, S. Yan, J-D. Wen, L. Lancaster, C. Wickersham, K. Fredrick, H. Noller, I. Tinoco and C. Bustamante, “Direct measurement of the mechanical work during translocation by the ribosome”, eLife 2014;3:e03406 (*) Equal contribution. | |
18. | K. Aathavan*, A. T. Politzer*, A. Kaplan*, J. R. Moffitt*, Y. R. Chemla, S. Grimes, P. J. Jardine, D. L. Anderson, and C. Bustamante, “Substrate Interactions and Promiscuity in a Viral DNA Packaging Motor”, Nature 461, 669 (2009). (*) Equal contribution. | |
17. | M. F. Andersen, A. Kaplan, T. Grünzweig, and N. Davidson, “Decay of Quantum Correlations in Atom Optics Billiards with Chaotic and Mixed Dynamics”, Phys. Rev. .Lett. 97, 104102 (2006). | |
16. | N. Davidson, A. Kaplan, M. F. Andersen, and T. Grunzweig, “Classical and quantum dynamics with ultra cold atoms in billiards”, in “Quantum Computer, Algorithms and Chaos”, Volume 162 International School of Physics Enrico Fermi, Edited by: G. Casati, D.L. Shepelyansky, P. Zoller and G. Benenti ( IOS Press, Amsterdam 2006). | |
15. | A. Kaplan, M. F. Andersen, T. Grünzweig, and N. Davidson, “Hyperfine spectroscopy of optically trapped atoms”, J. Opt. B: Quant. Semiclass. Opt. 7, R103 (2005). | |
14. | M.F. Andersen, T. Grünzweig, A. Kaplan, and N. Davidson, “Revivals of Coherence in Chaotic Atom Optics Billiards”, Phys. Rev. A 69, 063413 (2004). | |
13. | M. F. Andersen, A. Kaplan, T. Grünzweig, and N. Davidson, “Supression of Dephasing of Optically Trapped Atoms”, Phys. Rev. A 70, 013405 (2004). | |
12. | A. Kaplan, N. Friedman, M. Andersen, and N. Davidson, “Stable regions and singular trajectories in chaotic soft wall billiards”, Physics D 187, 136 (2004). | |
11. | A. Kaplan, M. Andersen, N. Friedman and N. Davidson, “Atom optics billiards”, in Chaotic dynamics and transport in classical and quantum systems, Editors: P. Collet, M. Courbage, S. Metens, A. Neishtast and G. Zaslavsky, NATO science series II, vol. 182 (Springer, 2004). | |
10. | M. F. Andersen, A. Kaplan, T. Grünzweig, and N. Davidson, “Echo spectroscopy and Atom Optics Billiards”, Communications in Nonlinear science and numerical simulation 8, 289 (2003). | |
9. | M. F. Andersen, A. Kaplan, and N. Davidson, “Echo spectroscopy and quantum stability of trapped atoms”, Phys. Rev. Lett. 90, 023001 (2003). | |
8. | A. Kaplan, N. Friedman, N. Davidson, “Optimized single-beam dark optical trap”, J. Opt. Soc. Am B 19, 1233 (2002). | |
7. | A. Kaplan, M. F. Andersen, and N. Davidson, “Suppression of inhomogeneous broadening in rf spectroscopy of optically trapped atoms”, Phys. Rev. A 66, 045401 (2002). | |
6. | M. F. Andersen, A. Kaplan, N. Friedman and N. Davidson, “Stable islands in chaotic atom- optics billiards, caused by curved trajectories”, J. Phys. B: At. Mol. Opt. Phys. 35, 2183 (2002). | |
5. | N. Friedman, A. Kaplan, N. Davidson, “Dark Optical Traps for Cold Atoms”, Adv. At. Mol. Opt. Phys. 48, 99 (2002). | |
4. | A. Kaplan, N. Friedman, and N. Davidson, “Acousto-optic lens with very fast focus scanning”, Opt. Lett. 26, 1078 (2001). | |
3. | A. Kaplan, N. Friedman, M. Andersen, and N. Davidson, “Observation of Islands of Stability in Soft Wall Atom-Optics Billiards”, Phys. Rev. Lett. 87, 274101 (2001). | |
2. | N. Friedman, A. Kaplan, D. Carasso, and N. Davidson, “Observation of chaotic and regular dynamics in atom-optics billiards”, Phys. Rev. Lett. 86, 1518 (2001). | |
1. | N. Friedman, A. Kaplan, and N. Davidson, “Acousto-optic scanning system with very fast nonlinear scans”, Opt. Lett. 25, 1762 (2000). |